ICB - Instituto de Ciências Biológicas
URI Permanente desta comunidadehttps://repositorio.ufpa.br/handle/2011/2151
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Item Acesso aberto (Open Access) Identification of duplicates of cassava accessions sampled on the North Region of Brazil using microsatellite markers(Instituto Nacional de Pesquisas da Amazônia, 2013-12) MOURA, Elisa Ferreira; FARIAS NETO, João Tomé de; SAMPAIO, José Edson; SILVA, Diehgo Tuloza da; RAMALHO, Girena FernandesDuplicates are common in germplasm banks and their identification is needed to facilitate germplasm bank management and to reduce maintenance costs. The aim of this work was to identify duplicates of cassava from a germplasm bank in Eastern Amazon, which had been previously characterized both morphological and agronomically. In order to be genotyped with 15 microsatellite loci, 36 accessions were selected. These accessions were classified into 13 groups of similar morpho-agronomical characteristics. All loci were polymorphic, and 75 alleles were identified, with an average of five alleles per loci and HE = 0.66. There were determined 34 pairs of genotypes with identical multiloci profiles and the probability of genetic identity was 1.1x10-12 with probability of exclusion of 99.9999%. Among these duplicates, there are accessions sampled on different years and places, but with different names and accessions with the same name sampled in different places and years. The study identified genotypes that are grown in different places and that have been maintained over the years by local farmers.Item Acesso aberto (Open Access) Molecular characterization of 'sweet' cassavas (Manihot esculenta) from a germplasm bank in Brazilian Eastern Amazonia(Sociedade Brasileira de Melhoramento de Plantas, 2016-03) CUNHA, Elisa Ferreira Moura; SILVA, Carlos Rogério de Sousa; ALBUQUERQUE, Paulo Sérgio Bevilaqua de; RAMALHO, Girena Fernandes; PONTES, Lígia Cristine Gonçalves; FARIAS NETO, João Tomé deGenetic variability of a set of 81 accessions of 'sweet' cassavas (Manihot esculenta) collected mostly in the North region of Brazil was investigated with nine microsatellite loci. All loci were polymorphic, with mean of 6.33 alleles per locus. Analyses indicated that 35 multiloci profiles were represented by a single accession, and 46 showed non-unique profiles, represented by eleven genotypes. Forty-six different multiloci profiles were detected. Most of the putative duplicated accessions were collected in different locations. After the removal of putative duplicated genotypes, genetic parameters were estimated and expected heterozygosity was high (HE=0.73), indicating genetic variability. Structure analysis of this set of 'sweet' cassavas divided the 46 genotypes into two clusters (K=2), and a few genotypes had mixed ancestry. Results indicated the habit of exchange of materials among farmers of the North region of Brazil, and the genetic variability to be exploited in genetic breeding efforts.Item Acesso aberto (Open Access) Molecular characterization of progenies of bacurizeiro (Platonia insignis) from Marajó Island, northeastern Amazon(Instituto Nacional de Pesquisas da Amazônia, 2017-12) PONTES, Lígia Cristine Gonçalves; MOURA, Elisa Ferreira; MOURA, Mônika Fecury; RODRIGUES, Simone de Miranda; OLIVEIRA, Maria do Socorro Padilha de; CARVALHO, José Edmar Urano de; THERRIER, JosetteThe bacurizeiro (Platonia insignis Mart.) is a tree native to the Amazon whose fruit is much used in the gastronomy in the North and Northeast regions of Brazil. Due to its great economic potential for these regions, the species is being conserved in germplasm banks to support genetic breeding programs. The aim of this work was the molecular characterization of P. insignis accessions belonging to the germplasm bank of the Embrapa Eastern Amazon research unit using ISSR (Inter Simple Sequence Repeat) markers. Seventy-eight accessions of P. insignis belonging to 16 progenies were sampled in two different localities on Marajó Island, state of Pará, Brazil. Among the 16 progenies, seven were collected in Soure and nine in Salvaterra. The 78 accessions were genotyped with 23 pre-selected primers. We obtained 121 amplified products, of which 54 were polymorphic. The most polymorphic primers were UBC 834, UBC 899 and UBC 900. Primers UBC810 and UBC884 did not amplify polymorphic bands. Forty-nine markers out of 54 were selected for genetic analyses. AMOVA within and among progenies showed low genetic differentiation (ΦPT = 0.064, P<0.001) with higher diversity within progenies (96%), low genetic differentiation among sampling localities (ΦPT = 0.025, P<0.013), and higher diversity within (98%) than among localities. Clustering by UPGMA based on Jaccard similarities among pairs of accessions did not separate genotypes according to progeny or sampling localitiy. We recommend that new germplasm surveys consider a greater sampling effort within sampling localitites.